Download, unzip, check permission and test the bioregion's binary files
Source:R/install_binaries.R
install_binaries.Rd
This function downloads and unzips the 'bin' folder needed to run some functions of bioregion. It also checks if the files have the permissions to be executed as programs. It finally tests if the binary files are running properly.
Usage
install_binaries(
binpath = "tempdir",
download_only = FALSE,
infomap_version = c("2.1.0", "2.6.0", "2.7.1", "2.8.0")
)
Arguments
- binpath
a
character
indicating the path to the folder that will host the 'bin' folder containing the binary files (see Details).- download_only
a
boolean
indicating whether the function should only download the 'bin.zip' file or execute the entire process (see Details).- infomap_version
a
character
vector or a singlecharacter
string indicating the Infomap version(s) to install.
Details
By default, the binary files are installed in R's temporary
directory (binpath = "tempdir"
). In this case the bin
folder will be
automatically removed at the end of the R session. Alternatively, the binary
files can be installed in the bioregion's package folder
(binpath = "pkgfolder"
).
Finally, a path to a folder of your choice can be specified. In this case
, and only in this case, download_only
can be set to TRUE
, but you must
ensure that the files have the necessary permissions to be executed as
programs.
In any case, PLEASE MAKE SURE to update the binpath
and check_install
accordingly in netclu_infomap, netclu_louvain and netclu_oslom).
Author
Maxime Lenormand (maxime.lenormand@inrae.fr)
Boris Leroy (leroy.boris@gmail.com)
Pierre Denelle (pierre.denelle@gmail.com)