This R package gathers a comprehensive set of algorithms to perform bioregionalization annalyses.
The different algorithms come from the network literature or can be (non)-hierarchical.
⏬ Installation
The package is not on CRAN yet and is still under active development. You can install the development version from the GitHub repository with the following command:
# install.packages("devtools")
devtools::install_github("bioRgeo/bioRgeo")
📜 Vignettes
We wrote several vignettes that will help you using the bioRgeo R package. Vignettes available are the following ones:
-
1. Installation of the executable binary files
- 2. Matrix and network formats
- 3. Pairwise similarity/dissimilarity metrics
- 4.1 Hierarchical clustering
- 4.2 Non-hierarchical clustering
- 4.3 Network clustering
- 4.4 Microbenchmark
Alternatively, if you prefer to view the vignettes in R, you can install the package with build_vignettes = TRUE
. But be aware that some vignettes can be slow to generate.
remotes::install_github("bioRgeo/bioRgeo",
dependencies = TRUE, upgrade = "ask",
build_vignettes = TRUE)
vignette("bioRgeo")
🖥️ Functions
An overview of all functions and data is given here.